Without this being finally resolved by Microsoft, let this answer serve only as a workaround.
Maybe these commands could be chained or something, anyway... my procedure was:
Exporting the public key from the now-considered deprecated keyring:
apt-key export "D404 0146 BE39 7250 9FD5 7FC7 1F30 45A5 DF75 87C3" > skypeforlinux.asc
De-armoring the file:
gpg --dearmor < skypeforlinux.asc > skypeforlinux.gpg
Moving the GPG key file in proper place:
sudo mv skypeforlinux.gpg /usr/share/keyrings/
Editing my skype-stable.list:
sudo nano /etc/apt/sources.list.d/skype-stable.list
as follows:
deb [arch=amd64 signed-by=/usr/share/keyrings/skypeforlinux.gpg] https://repo.skype.com/deb stable main
To prevent changing this file from further updates, setting it immutable:
sudo chattr +i /etc/apt/sources.list.d/skype-stable.list
Finally, removing the GPG file from the original keyring:
sudo apt-key del "D404 0146 BE39 7250 9FD5 7FC7 1F30 45A5 DF75 87C3"
Final thoughts, as was said this is merely a workaround of a non-urgent issue, and for sure will have to be fixed by Microsoft itself in the future... And if you can do better than me, feel free to edit this answer directly. Cheers.