I need some help figuring out where my code is hitching up. The code is below:
servers=( Sanger )
races=( American African Asian)
jobbs=( NCBI )
ranges=( 1-2, 2-3, 3-4 )
for server in "${servers[@])"
do
for job in "${jobbs[@]}"
do
for race in "${races[@]}"
do
for range in "${ranges[@]}"
do
cd ${RESULTS}
cd "$server"
cd "$job"
cd "$race"
cd "$range"
for CHR in {1..22}
do
mv -v "$CHR".vcf.gz chr"$CHR".dose.vcf.gz
mv -v "$CHR".vcf.gz.csi chr"$CHR".dose.vcf.gz.csi
done # chromo
done # range
done # race
done # job
done # server
My Bash terminal returns the errors:
./rename.sh: line 41: unexpected EOF while looking for matching `"'
./rename.sh: line 52: syntax error: unexpected end of file
ShellCheck output is below:
Line 9:
for server in "${servers[@])"
^-- SC1009: The mentioned syntax error was in this parameter expansion.
Line 32:
mv -v "$CHR".vcf.gz chr"$CHR".dose.vcf.gz
^-- SC1078: Did you forget to close this double quoted string?
Line 33:
mv -v "$CHR".vcf.gz.csi chr"$CHR".dose.vcf.gz.csi
^-- SC1079: This is actually an end quote, but due to next char it looks suspect.
^-- SC1073: Couldn't parse this double quoted string. Fix to allow more checks.
Line 43:
done # server
^-- SC1072: Expected end of double quoted string. Fix any mentioned problems and try again.
Could any please help and check if I've missed something? Thanks!
